Pig pangenome graph reveals functional features of non-reference sequences

Table 1 Details of 21 pig genome used for construction of pig pangenome graph

Genome	Breed	Sex	Assembly level	GenBank accession	Region	Reference
Sus scrofa 11.1	Duroc	Female	Reference	GCA_000003025.6	Europe	[31]
USMARC	US crossbreed pig	Male	Chromosome	GCA_002844635.1	America	[31]
DU	Duroc	Male	Chromosome	GCA_015776825.1	Europe	[51]
MS	Meishan	Female	Chromosome	GCA_017957985.1	Asia	[52]
NX	Ningxiang	Female	Chromosome	GCA_020567905.1	Asia	[53]
BMmini	Bamaxiang	Male	Chromosome	GCA_007644095.1	Asia	[54]
HP	Hampshire	Female	Scaffold	GCA_001700165.1	Europe	[7]
LR	Landrace	Female	Scaffold	GCA_001700215.1	Europe
BK	Berkshire	Female	Scaffold	GCA_001700575.1	Europe
PT	Pietrain	Female	Scaffold	GCA_001700255.1	Europe
LW	Large White	Female	Scaffold	GCA_001700135.1	Europe
BM	Bamei	Female	Scaffold	GCA_001700235.1	Asia
RC	Rongchang	Female	Scaffold	GCA_001700155.1	Asia
TB	Tibetan	Female	Scaffold	GCA_000472085.2	Asia
JH	Jinhua	Female	Scaffold	GCA_001700295.1	Asia
WZS	Wuzhishan	Male	Scaffold	GCA_000325925.2	Asia	[55]
EUW	European wild boar	Male	Scaffold	GCA_021656055.1	Europe	[56]
KNY	Kenya domestic pig	Male	Scaffold	GCA_019290145.1	Africa	[57]
EGM	Ellegaard Gottingen minipig	Female	Scaffold	GCA_000331475.1	Europe	-
SWT	Shawutou	Male	Contig	-	Asia	-
TC	Tunchang	Male	Contig	-	Asia	-

ISSN: 2049-1891